Installation

Attention: Before all, users have to install bedtools, please refer to bedtool-documentation, then be sure to export the bedtools to environment path.

PyPI only

you can easily run:

pip install MiScan

Development Version

To work with the latest version on GitHub: clone the repository and cd into its root directory. To install using symbolic links (stay up to date with your cloned version after you update with git pull) call:

pip install -e .

Docker

If you’re using Docker, you can use code below to get the newest image:

docker pull jefferyustc/miscan_command_line:latest

for docker command line usage, please see tutorial, you can also select a suitable image version from dockerHub