core.vcf_to_sparse (outDir, inFeaID, …) |
convert the vcf to a feature matrix, matrix.mtx :param outDir: output directory :param inFeaID: 13885fea_exon_cut_100bp_2sample.txt in dependency_data :param inFeaBed: tcga_13885fea_exon_cut_100bp.bed in dependency_data :param inVcf: the input vcf file path :param featureID: featureID.bed in dependency_data :return: |
core.prediction (outDir, model_weight) |
predict single sample breast cancer risk |
core.generate_report (inDir, outDir, y_pred_pat) |
generate report for single sample, including Cancer Risk Prediction | Top Gene Mutation Sites |
core.miscan_main (outDir, inVcf[, model_weight]) |
website sanctuary analysis core callable func :param model_weight: path of model weights :param outDir: temp, final result dir :param inVcf:input vcf full absolute path :return:no return |